Hi Dimitrios,
Agree with Burce. The youngest we have processed with the standard
pipeline was about 4.5yrs.
Lilla
On Wed, 18 Sep 2019, Bruce Fischl wrote:
Hi Dimitrios
it's kind of an empirical question. Lilla does have some newer tools you
might consider instead of things aren't as
Hi Dimitrios
it's kind of an empirical question. Lilla does have some newer tools you
might consider instead of things aren't as accurate as you want
cheers
Bruce
On Wed, 18
Sep 2019, Alexopoulos, Dimitrios wrote:
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We have acquired 0.8mm
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Thanks Doug. The problem is that for some patients the lesion affects the
segmentation dramatically. For example I have one patient with a large
lesion in the right cerebellum which is partly in GM and partly in WM. If I
load the aseg file I see that a
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We have acquired 0.8mm isotropic T1-mprage sequences on 2 year old subjects.
Although the output looks good (see below), is it recommended to use FS6.0 on a
young cohort?
[cid:image005.jpg@01D56E40.7241E0E0][cid:image006.jpg@01D56E40.7241E0E0]
The Gaab Lab (www.gaablab.com) is looking for a Clinical Research Assistant II
to assist with all study phases of functional and structural MRI for our
longitudinal infant MRI study. This position is ideal for anyone considering
future graduate study in cognitive (developmental) neuroscience,
Thanks a lot Doug!
It was exactly what I needed.
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
From:
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Dear list,
I needed some GNU R functions which read and write MGH/MGZ files including all
the header information, so I wrote them and also put them into a package to
share them.
Support for binary 'curv' format morphometry files (like
Hi Vasudev
-openmp N is the best way at the moment. Do you actually have 3 cores to
dedicate? Usually due to memory access speeds and such we don't see much
gain after N=4, but I'm surprised there is no effect
cheers
Bruce
On Wed, 18 Sep 2019,
Dev vasu wrote:
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I would recommend GNU parallel. I have 2 scripts here:
https://github.com/dfsp-spirit/shell-tools/tree/master/gnu_parallel_reconall_minimal
and an explanation of what they do and how to use them at
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Hi Vasudev,
in case you use v6, you can use the -parallel flag to process the hemispheres
(and a few other things if I remember correctly) in parallel. Note that doing
so will parse the -openmp flag to all instances. E.g.
recon-all -all -openmp 4
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Dear all,
I am using - openmp 30 to run recon-all, i see now change in the execution
time period.
Could you please highlight me a method to reduce the execution time for
recon-all, if possible some parallel script to do that same.
Thanks
Vasudev
Dear Chris,
Can you please send us the output txt file?
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Krzysztof Gbyl
Reply-To: Freesurfer support list
Date: Wednesday, 18 September 2019 at
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Hi FS experts,
I am using the module of segmentation of hippocampal subfields.
About the output of lh.hippoSfLabels-T1.v10.mgz, could you pls provide the
correspondence between the values of segmentation volumes in the image file and
the anatomical
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