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Hello Adam,
Please check if you have a “freeview.bin” program.
$ which freeview.bin
If you get a path back with freeview.bin in it, e.g. something
like/usr/local/freesurfer/bin/freeview.bin
- then try the ldd command on freeview.bin,
$ ldd `which
Hi, you need to run recon-all on the T1, not on the diffusion scan. This will
produce an anatomical segmentation of each subject based on the T1s, which
TRACULA will then use to extract anatomical priors on white matter tracts, to
aid tractography. When you run trac-all to do the actual
I see. Yes, a bunch of those are on our to-do list for segmentation but
we don't have anything distributable at the moment. You are probably
better off running some other nonlinear warping like ANTS or VoxelMorph
to propagate the labels.
cheers
Bruce
On Sat, 19 Oct 2019, Vinny K wrote:
