Re: [Freesurfer] BrainStem & HippoAmyg segmentation

2019-12-23 Thread Iglesias Gonzalez, Juan E.
Dear Meena, Running the dev version of recon-all is a really bad idea, as your results will not be reliable or reproducible. I would use dev for the hippo/amygdala substructures and then switch back to 6.0. Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and

[Freesurfer] BrainStem & HippoAmyg segmentation

2019-12-23 Thread Meena M. Makary
External Email - Use Caution Hi, I am using Freesurfer stable6_0_0 (/autofs/cluster/freesurfer/centos6_x86_64/stable6_0_0/bin) and I used it for all my subjects, so far. Now I would like to do BrainStem and HippocampalSubfieldsAndNucleiOfAmygdala segmentation which needs me to

Re: [Freesurfer] Save output as attach file

2019-12-23 Thread Nader Razmara
External Email - Use Caution Hi Roupeng Can i hope you do it soon. It is an important part of my phd thesis. Best regards and best wishes Nader On 23 Dec 2019 19:24, "Ruopeng Wang" wrote: Hi Nader, Freeview can't do that currently. But I will add an option for it. Best,

Re: [Freesurfer] Qdec support {Disarmed}

2019-12-23 Thread fsbuild
External Email - Use Caution Hello Leona, What is the error that you are seeing? Qdec is a 32 bit program (*not* 64 bit), so even Mac OS 10.14 (Mojave) may put up a warning that it is not optimized and needs to be re-compiled, but it should still run. It will not however run if

Re: [Freesurfer] Save output as attach file

2019-12-23 Thread Ruopeng Wang
Hi Nader, Freeview can't do that currently. But I will add an option for it. Best, Ruopeng On 12/21/19 10:19 AM, Bruce Fischl wrote: > oh, you want to save a volume that has just the borders of each > structure labeled? I'm not sure we have anything that can do that. > Ruopeng: can freeview?

[Freesurfer] Qdec support

2019-12-23 Thread Leona.Salewski
External Email - Use Caution Dear experts, i was trying to run Qdec on macOS Mojave, in the past it always worked well. But now I am not able to generate stats data any more, an error message pops up every time I try running it. Is there a general problem running Qdec or is it