[Freesurfer] help: fs-fast group level analysis per run

External Email - Use Caution Hello freesurfers, I'm attempting to run second-level analysis on separate runs of a brain scan, that were generated by selxavg3-sess -run-wise (pr001, pr002, pr003, pr004) as described in selxavg3-sess --help. But, when attempting to concatenate the

Re: [Freesurfer] FreeSurfer analyses in MatLab

External Email - Use Caution On Tue, Jan 21, 2020 at 10:40 AM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > > > On 1/17/2020 10:39 AM, Graduate Imaging wrote: > > External Email - Use Caution > >> Hello, >> >> I recently ran a vertex wise analysis on two

Re: [Freesurfer] Change the subject ID after recon-all?

glad it worked out Bruce On Wed, 22 Jan 2020, Tim Schäfer wrote: External Email - Use Caution Hi Antonin and Bruce, thanks for your great suggestions and the headsup on the command line history in the file. I tried both methods and they both work. We will definitely remove the IDs,

Re: [Freesurfer] Change the subject ID after recon-all?

External Email - Use Caution Hi Antonin and Bruce, thanks for your great suggestions and the headsup on the command line history in the file. I tried both methods and they both work. We will definitely remove the IDs, so this is very helpful. All the best, Tim -- Dr. Tim

[Freesurfer] Mean thickness values from sig.mgh

External Email - Use Caution Hello Freesurfer developers, I wanted to extract mean thickness values of all participants from the uncorrected significance maps obtained from mri glmfit for structural data instead of extracting it from the corrected maps from glmfit sim. Is there a