Re: [Freesurfer] longitudinal FreeSurfer help

2020-03-17 Thread Swati Rane
External Email - Use Caution This is extremely helpful. Thank you, Kersten. Swati From: on behalf of "Diers, Kersten /DZNE" Reply-To: Freesurfer support list Date: Sunday, March 15, 2020 at 1:23 PM To: Freesurfer support list Subject: Re: [Freesurfer] longitudinal

Re: [Freesurfer] format bvalues bvectors tracula

2020-03-17 Thread Bruce Fischl
Hi Renew please have patience. We are all dealing with a lot. Transitioning to working at home and trying to figure out how to be productive and such. cheers Bruce On Tue, 17 Mar 2020, Renew Andrade wrote: External Email - Use Caution Dear Yendiki Anastasia: I am replying for

Re: [Freesurfer] format bvalues bvectors tracula

2020-03-17 Thread Renew Andrade
External Email - Use Caution Dear Yendiki Anastasia: I am replying for second time. I haven’t received an answer about this issue. I don’t know if it is silly but I don’t know how to fix it. It is not / slashes in this case. dmrirc.IXI Description: Binary data Sincerely,

Re: [Freesurfer] mri_glmfit and mri_glmfit-sim

2020-03-17 Thread Varun Chandran
External Email - Use Caution Dear FS experts, I am trying to run the cluster-wise correction by using permutation based multiple comparison. For this, as you would know, we use: mri_glmfit-sim In attempt to this, I tried running different options mri_glmfit --y

[Freesurfer] cortical area and volume calculation method

2020-03-17 Thread Ting Li
External Email - Use Caution Dear Freesurfer Experts, Where I can find any document that explaining how the cortical area and volume were calculated? or Could you give me an introduction about it. Thank you so much! Best regards, Ting

Re: [Freesurfer] overlay threshold in freeview

2020-03-17 Thread Ruopeng Wang
Hi Rachele, The automatic threshold setting of overlay in freeview was meant to just quickly set an initial value for user to see. As I check the code, the high threshold is set as the maximum value, the low is set simply as the mid point between min and max values. It wasn’t meant to be

[Freesurfer] training set

2020-03-17 Thread javier quilis
External Email - Use Caution Hello everyone, I'm trying to do a study of a comparison between the automated methods to analyze structural MRI from FSL and Freesurfer. I am interested in the training set used by Freesurfer to do the brain segmentation and I can not find a

Re: [Freesurfer] overlay threshold in freeview

2020-03-17 Thread Rachele Sanfelici
External Email - Use Caution Dear Freesurfer experts, Sorry for catching up so late, you can imagine the situation here in Europe.. Thank you Ruopeng for your answer! What I’m trying to figure out, though, is how Freeview automatically sets the threshold for overlays, not how