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Hi FreeSurfer Experts,
I am trying to correct for multiple comparisons by running a permutation for a
non-orthogonal design. Based on reading through the blog, I came up with the
follow script:
mri_glmfit-sim --glmdir rh.volume.AgeSex.10.glmdir
Why are you converting it to the volume? You can load the surf-based
file in matlab with
ces = MRIread('ces.nii.gz');
You can load the label with labe_read.m (or read_label.m, can't remember)
On 3/22/2020 12:15 PM, Star Xi wrote:
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Hi FS experts,
I’m
Sorry, I missed that you were in the volume. Try using mri_label2vol,
something like
mri_label2vol
--label lh.entorhinal.label
--temp orig.mgz
--identity
--fillthresh .01
--subject subjectname
--fill-ribbon
--o lh.ento.mgz
On 3/20/2020 11:08 PM, Mohammad Rashid wrote:
Hi Devika
the volumes should be in the stats/aseg.stats file for each subject.
cheers
Bruce
On Thu,
26 Mar 2020, Devika K wrote:
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Hi,
I want to extract hippocampal volume from longitudinal samples. I am less
aware of it. I ran recon-all-all
Hi Mason
not sure we can help if everything looks good in freeview. Doesn't that
make it a SamSrf issue? Or an interface between the two packages? Have you
checked with their support?
cheers
Bruce
On Thu, 26 Mar 2020, Mason Wells wrote:
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In the event
Have you checked the original aseg paper? If not, then it will be in
Rahul's cortical parcellation one as it is the same data
cheers
Bruce
On Thu, 26 Mar 2020, javier quilis wrote:
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Hi Bruce,
thanks for the answer. Is there any paper where this
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Hi,
I want to extract hippocampal volume from longitudinal samples. I am less
aware of it. I ran recon-all-all with longitudinal pipeline for all those
samples.
How I need to process further (Commands that I need to follow).
Would you please help me
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In the event that Bruce might not be able to help. I ask if anyone else on the
list has experience with the problem described in this thread? Any help would
be greatly appreciated.
Best wishes,
Mason
Mason T Wells, MSc
PhD student
School of
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Hi Bruce,
thanks for the answer. Is there any paper where this is explained? I want to
detail this in my paper and I would like to refer to the source.
Thanks again,
Javier
De: freesurfer-boun...@nmr.mgh.harvard.edu
