[Freesurfer] Canon MRI morphometry protocols

External Email - Use Caution Dear experts We are trying to take MRI with Canon magnetic resonance for FreeSurfer analysis. I'd appreciate If you could give me the recommended T1 structural protocol for Canon scanners. Thank you in advance. Shujiro Shujiro Minami M.D.,

[Freesurfer] question about ventricular volume calculation

External Email - Use Caution Dear FreeSurfer Developers: I want to calculate ventricular volume using the 'recon-all' procedure. Would you like to let me know in how the ventricular volumes were calculated? Thank you! FreeSurfer version:

Re: [Freesurfer] Recon1 command {Disarmed}

External Email - Use Caution Dr. Fischl, Thank you so much for your reply. The brains I'm using have been processed and analyzed numerous times for a variety of projects in our department and are in several directories on the same computer. However, I copied only the .nii files

Re: [Freesurfer] Help with mergecontrasts-sess function

External Email - Use Caution Thanks for your reply, that worked. Can you please tell me where I can find a summary table of the activated regions resulting from the conjunction analysis? Best regards, Paula > Il giorno 27 ott 2020, alle ore 22:50, Douglas N. Greve > ha

Re: [Freesurfer] trac-all -bedp error after successful -prep

External Email - Use Caution solved it, turns out symlinks don't like relative paths (which I was using in the config file for tracula), changing those to absolute paths tracula finished with no errors On Fri, 6 Nov 2020 at 11:38, Michele Valotti wrote: > Hi all, > I am trying

Re: [Freesurfer] Freesurfer 7.1.0 on CentOS 8.1 {Disarmed}

External Email - Use Caution Hello, Thank you for the reply. 1. Regarding the Nvidia drivers, we don’t have GPUs in most of our nodes (which is where I’m running freeview from). The CPUs should be doing all the rendering in this case. 2. I am the administrator of this

[Freesurfer] Postdoctoral Fellowship in advanced multi-parametric imaging in Parkinson’s disease, Alzheimer’s disease, and healthy aging

External Email - Use Caution My Lab, at Barrow Neurological Institute (Phoenix, AZ), is looking for a Postdoc. For more information email to: Ashley M. Stokes, Ph.D. Assistant Professor // Division of Neuro-Imaging Research Barrow Neurological Institute

[Freesurfer] color and sign of sig.mgh data

External Email - Use Caution Hello, I am creating sig.mgh overlays in a group analysis. On this map, I can see some blue and red vertices, corresponding to negative and positive values (respectively) on the map. On the other hand, I read in the documentation that sig.mgh is a

[Freesurfer] Correlation between thickness and csf_measures: vector

External Email - Use Caution Dear Freesurfer experts, I am conducting a cortical thickness study in three groups. After performing the between-group analyses, I would like to evaluate the possible correlation between cortical thickness and the levels of some csf measures. To do