[Freesurfer] Fwd: label to surface

External Email - Use Caution Hi! Just pinging. Is there a way to get the surface+overlay file as mentioned above using freesurfer? Thank you! Best regards, Sam -- Forwarded message - From: Sam W Date: Fri, Jul 10, 2020 at 9:05 PM Subject: Re: [Freesurfer] label t

[Freesurfer] White matter Parcellation

External Email - Use Caution Dear FreeSurfer experts, I need help trying to understand how the white matter gets parcellated. I have a clinical dataset, which means that the resolution is not as research images, but it ran without a problem. I would like to measure the volume of

[Freesurfer] Postdoctoral fellowship opportunity in diffusion MRI and functional vision

External Email - Use Caution *Thalamocortical connectivity and multicomponent T2 relaxometry in youths with neonatal periventricular white matter injury* NIH-funded Postdoctoral fellowship at the Schepens Eye Research Institute of Massachusetts Eye and Ear, Harvard Medical School

[Freesurfer] (no subject)

External Email - Use Caution Hi, Hope all are safe and well. Can anyone help me in finding any biomarker for Alzheimer's Disease or any guidance related to that? Waiting for response. Regards: Rahul Sharma Research Scholar 9827834360 *"Manners Maketh Man"* __

[Freesurfer] cortical thickness ROI

External Email - Use Caution Hi Freesurfer developers, I wanted to know if I could use an ROI obtained from cortical thickness group analysis to obtain FA values from that same ROI for each of the subjects. Appreciate any guidance, thank you. Sincerely, Sara _

[Freesurfer] white matter volume

External Email - Use Caution Hi, Is there a way to get at the white matter volume from a group analysis? Sara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] recon all

If there is only one image, then it skips the motion correction. You can't correct for motion from a single image. On 2/1/2021 9:36 AM, 郑凤莲 wrote: External Email - Use Caution Hi Greve, Thanks for your attention and help. If there is no head motion correction, I confused about the fi

Re: [Freesurfer] recon all

External Email - Use Caution Hi Greve, Thanks for your attention and help. If there is no head motion correction, I confused about the first step in recon-all ("motin correction" in the figure). What does it mean? I am looking forward to your reply. Thanks! Sincerely, Zheng

[Freesurfer] FW: Re: SAMSEG questions

External Email - Use Caution Forwarding Koen's and my answers From: Koen Van Leemput Sent: 01 February 2021 10:22 To: Stefano Cerri Cc: David Kamson Subject: Re: SAMSEG questions Hi Stefano and David, Regarding GPU/tensorflow issues, Andrew reco

[Freesurfer] the T2.mgz in subject/mri should be skull stripped or not?

External Email - Use Caution Hi all, I encountered a problem about the T2.mgz in subject/mri. I ran my data using recon-all -all -i T1path -s name -T2 T2path -T2pial(7.1.1 or 7.1.0), but the results were inconsistent, sometimes the mri/T2.mgz had skull sometimes it didn't. That

[Freesurfer] report results

External Email - Use Caution Dear experts, In addition to t and p-value, I would like to report the beta coefficient of the fixed effects in the following regression equation for the vertex showing the max statistic within the cluster that survived multiple comparison correction: