[Freesurfer] Failed to sign in

2022-07-24 Thread krystaly
External Email - Use Caution Dear FS experts, I'm using FS 7.2.0 on ubuntu 18.4.6, which is running on Windows 10. However, when I entered the password that I received doesn't let me sign in. Would you please kindly advise? Thanks. Regards, Krystal Tel.: +852 2255 5024

Re: [Freesurfer] ERROR: Talairach failed

2022-07-24 Thread Douglas N. Greve
did you see where it said "see http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach

Re: [Freesurfer] etiv value differs if using recon all vs freesurfer dev

2022-07-24 Thread Douglas N. Greve
I cannot replicate this on my data. The differences are rather extreme (factors of 3). Can you get us access to the one with the largest difference? YOu can also try regenerating the aseg.stats file, eg, cd subject/ mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/redo.aseg.stats --pv

Re: [Freesurfer] Understanding ?h.sphere.reg

2022-07-24 Thread Douglas N. Greve
The ?h.sphere.reg xyz coordinates are coordinates on the sphere. To apply a spherical registration, a point on one spherical mesh is mapped to the closest point on the other spherical mesh. not sure if that answers your question ... On 7/21/2022 5:26 PM, Salar Dini, Elaheh wrote:

[Freesurfer] etiv value differs if using recon all vs freesurfer dev

2022-07-24 Thread Miriam Taza
External Email - Use Caution Hello, I am getting different etiv values when running recon(orange) all VS mri_sclimbic_seg (blue). My analysis uses limbic volumes extracted from the dev version but I am not sure if I should just use the etiv from recon all, given the data is

Re: [Freesurfer] Qdec: Can't find a usable init.tcl

2022-07-24 Thread fsbuild
External Email - Use Caution Hello Rosa, The qdec program is deprecated in 7.X releases and is no longer maintained. In the 7.X releases, you can try using freeview for images and from the command line there are the mri* commands (mris_surf2surf, mri_glmfit, mri_glmfit-sim,

[Freesurfer] Qdec: Can't find a usable init.tcl

2022-07-24 Thread Rosa de los Angeles Tanzi
External Email - Use Caution Dear FreeSurfer Developers, I'm attempting to open Qdec on my linux server. I used to open it with freesurfer 6.0.0 activated to analyze our local gyrification index data. That version is not available anymore in our service; hence, the Freesurfer