Re: [Freesurfer] Are inflated surfaces vertices transformed in Freeview?

2022-12-04 Thread Douglas N. Greve
freeview will show the coords of the white surface for the inflated surface since those of the inflated surface are not meaningful. why not just get the vertex no and reference that in matlab? Note that matlab will use 1-based indexing vs freeview uses 0-based On 12/3/2022 12:27 PM, Sarah

[Freesurfer] Application portal open for 2023 session of Training in Advanced Statistical Methods in Neuroimaging and Genetics

2022-12-04 Thread ROBERT CARY WELSH
External Email - Use Caution Hi folks, We are pleased to announce that the application portal is open for the NIH funded 2023 session of the course, “Training in Advanced Statistical Methods in Neuroimaging and Genetics”. The course will start on Monday, April 3, 2023 and

Re: [Freesurfer] Autorecon-pial with T1w and T2w images

2022-12-04 Thread Glasser, Matt
External Email - Use Caution Use the -T2 and -T2pial flags. Matt. From: on behalf of Steve Petersen Reply-To: Freesurfer support list Date: Sunday, December 4, 2022 at 10:01 AM To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] Autorecon-pial with T1w and T2w images

[Freesurfer] Autorecon-pial with T1w and T2w images

2022-12-04 Thread Steve Petersen
External Email - Use Caution Dear FreeSurfer experts, After reviewing and manually editing the recon-all outputs in freeview, I'm going to re-run the recon-all command with the autorecon-pial flag. My question is, does the autorecon-pial also take into account the T2w image or