[Freesurfer] mri_synthsr with CT images

External Email - Use Caution Dear Juan: I tested mri_synthsr using three different CT images with the threshold (80 value) that you told me some days ago. The first works ok, but with the other 2, I got the following error: developer@developer-VirtualBox:~$ mri_synthseg --i

Re: [Freesurfer] Error When Running Recon-all- "Segmentation Fault"

Hi Annie, It looks like you are using an older release - freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0. See compatibility issues discussed in this post: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg74552.html Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu

[Freesurfer] Error When Running Recon-all- "Segmentation Fault"

External Email - Use Caution Hi there, I am currently trying to run recon-all using a supercomputer at my university and am running into more errors than usual. When trying to run recon-all from my terminal, I ran into this error message: [asurite@agave1:~/Desktop/T1_IMAGE]$

[Freesurfer] head in a bad position in scanner

External Email - Use Caution We acquired some data this morning where the participant's head was in an unusual orientation. The participant has cervical dystonia. I have processed data like this before and freesurfer always fails. I am assuming Freesurfer is unable to register the

[Freesurfer] Job posting: Research assistant Z-lab @OSU

External Email - Use Caution Dear all, I'm hiring a full-time research assistant. Please see below! The Ohio State University, Dept. of Psychology – Dr. Zeynep Saygin’s Lab, to assist with neuroscience research on the functional and structural architecture of the human brain

Re: [Freesurfer] Transparency issue in FreeView

Great, thanks R! -Paul From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of fsbuild Sent: Friday, March 17, 2023 1:00 AM To: freesurfer@nmr.mgh.harvard.edu Cc: anthony.gala...@nih.gov Subject: Re: [Freesurfer] Transparency issue in FreeView

[Freesurfer] Help passcode

External Email - Use Caution Hello FreeSurfer, Where can I find a passcode to unzip the VW file FS_7_2_0_ubuntu_18_04_06.ova.7z I have just downloaded? Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] mri_synthseg ERROR 'std::bad_alloc'

External Email - Use Caution Various postings reference it’s related to the application failing to obtain memory. That does not necessarily mean virtual/physical memory is exhausted, but rather the memory management scheme used by the application is unable to provide a big

[Freesurfer] mri_synthseg ERROR 'std::bad_alloc'

External Email - Use Caution Dear Freesurfer team, I have now fs 7.3.2 installed on ubuntu 22.04.2 on a 8 core i7-4790 CPU (supporting AVX instructions) with 28.0Gb fs works fine now, but I had a patient where the segmentation did not work well, so I wanted to try