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Why is the brain white?
I have been changing the thresholds and nothing seems to work...
Kind regards,
Rosie
On Thu, May 4, 2023 at 7:53 PM Douglas N. Greve
wrote:
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> can you be more specific?
>
> On
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can you be more specific?
On 5/4/2023 1:34 PM, Rosalia Dacosta Aguayo wrote:
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Dear Freesurfer's experts,
Why is this happening?
Kind regards,
Rosie
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If you download the dev version, you can run something like this:
mri_binarize --dilate-vertex vtxno lh.white 10 lh.white.circle10.mgz
where vtxno is the vertex no where you want the circle to be centered,
10 is the radius of the circle in mm
It will
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what do you mean that you won't want to do any resampling? How else
would you apply a transform? Or do you mean that you want to use nearest
neighbor resampling (so no interpolation)? If so, you can use
mri_vol2vol with the --interp nearest option
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what is the error you are talking about? The area around the stroke? In
theory, you could edit to WM where the WM is now gone, but you'd have to
wait for the next version of FS, and even then I'm not sure it would
work. Or are you talking about the
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Dear Experts,
My aim is to get circular ROIs. At the moment i am trying it on the flatmap,
and i am writing a matlab script to do the task. However, I am getting a
problem to open the output file (.flat) of the mris_flatten function as surface
in
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To whom it may concern
> Would you please send me the password for unzipping the virtual box file?
Best
Neda
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Hello FreeSurfer Developers,
Some T1s we collected have higher intensity in the occipital cortex.
The default recon-all failed skull stripping and wm/gm segmentation in
that part of the brain. After several tests, we found that doing ants
N4 bias