[Freesurfer] Use pial or white surface area of FreeSurfer?

External Email - Use Caution Dear experts, Surface area is a commonly used metric. Unlike thickness and volume, area could be calculated based on white surface or pial surface in FreeSurfer. I don’t know which one should be better used for analysis. I believe the pial

[Freesurfer] FS 6.0 outputs for use with 7.2 Tracula

External Email - Use Caution Can the tracula version in FS 7.x be used with surface outputs generated with FS 6.0? Our segmentations/surfaces generated with 6.0 look good but we'd like to generate the 42 WM pathways incorporated in FS 7x. Is this possible? I was under the

[Freesurfer] Tksurfer option for horizontal scale bar

Hi Freesurfers, I’m using TkSurfer to visualize my results and want to add a horizontal color scale bar. I used [ -colorscalebarflag 1 ] to do so, but I only got a vertical bar. Is there any way (command options) to get a horizontal color scale bar? Thanks, jeungchan

[Freesurfer] Brainnetome atlas

External Email - Use Caution Dear all, I would like to extract the cortical thickness, subcortical volumes and eTIV from the Brainnetome atlas of subjects I have preprocessed with FreeSurfer v7.3. I understand this entails several steps. Could someone advise me how to do this?

[Freesurfer] aparcstats2table - append option

Hi FS Devs, Would it be possible to add an "append" flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful. Thanks, Mitch