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Hello Yujing,
Thank you for your quick response!
When I run:
mris_calc -o rh.area.mid /path/to/subject/surf/rh.area add
/path/to/subject/surf/rh.area.pial
I get the following error:
error: No such file or directory
error:
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Yes, the problem is that the white surface on the left side of the image is
extending too far into subcortical gray matter. We did delete the control
points and ran some white matter edits, but the image I sent you is after we
applied those edits
Hi Taylor,
I don't understand how you could get that error. It seems to me that
read_signa() is for reading .signa files.
Can you try 'mris_calc -o rh.area.mid rh.area add rh.area.pial' directly? Pass
full path to your rh.area and rh.area.pial.
What does 'mri_info rh.area' report?
Best,
The easiest thing is to set up contrasts to pull out the parameters you
want. The next easiest (or maybe the easiest) is to look in the beta
file. It will have a frame for each column in the design matrix. The
value is the regression coefficient.
On 3/5/2024 11:33 AM, Hoskinson, Kristen
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We’re working on a project where we ran 3 groups, 1 covariate, and ran a glm
looking at white matter at cross-sections from TRACULA output, covarying for
functional activation. We’re now wanting to plot out the interaction/slopes per
group, but are
Most of the info has been lost for that scan. It was a GE 1.5T scanner;
subject is a male, approx 37yo
On 3/4/2024 2:49 PM, Shounak Nandi wrote:
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Hi,
I have used the *bert
Just to make sure I understand, the problem is that the white surface on
the left side of the image is extending too far into subcortical gray
matter, right? This can be difficult to fix, but the right fix is to
edit the wm.mgz. Make sure to delete your control points as that is not
the right
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The newly established Cognitive Neuroscience & Neurotechnology group led by Dr.
Romy Lorenz is looking for two enthusiastic PhD students (m/f/d) to join our
growing team at the Max Planck Institute for Biological Cybernetics in
Tübingen, Germany.
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Hi Yujing,
Thank you so much for your help. It works well!
Cheers,
Rosie
At 2024-03-01 21:39:02, "Huang, Yujing" wrote:
Hi Rosie,
Are you trying to combine all volume files (.nii.gz) into one single volume by
stacking all frames? Maybe you
