Re: [Freesurfer] PetSurfer: Can kinetic modeling be applied to PET data with single frame?

2024-04-01 Thread WONG Wan Wa
External Email - Use Caution Hi Douglas, Here is the information given by the technician from the PET center: There are a total of 3 machines used for PIB PET/CT or PET/MR scans 1. PET/CT1 ( mCT)(contain "mCT" in the pet series) Manufacturer: Siemens

Re: [Freesurfer] [FreeSurfer] Lesion detection at different thresholds

2024-04-01 Thread fsbuild
External Email - Use Caution You can try using the Silicon Mac development build on the M2 machine.. The download links is,

Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?

2024-04-01 Thread r04458005
External Email - Use Caution Hello Eugenio Thanks for the reply! After I follow your instruction, the command works for a while for the segmentation part and some errors come up as following. Any hints? Thanks in advance for your help. Best, Edward

Re: [Freesurfer] recon-all mri_convert error: extra argument ("/usr/local/freesurfer/subjects/maoyipeng/mri/orig/001.mgz")

2024-04-01 Thread Douglas N. Greve
You have a space in your current path (between severe and similar). That is causing the problem On 4/1/2024 8:26 AM, Huang, Yujing wrote: There is a space in your path ‘/home/pengcuiyi/Desktop/QinLab/MRI_human_brain/severe similar/first_sT1W_3D_TFE_tra_MR350895.nii’. Rename the directory

Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?

2024-04-01 Thread Iglesias Gonzalez, Juan E.
Dear Edward, Try deleting: /home/chang/GBM_Data/T1_template/Template_MNI_Normal122_sc_age19-40_tirq_1.0mm_T1_scalp_trip_synthseg.nii and /home/chang/GBM_Data/GBM_original/20231223_1/Pre/Kuo/Brain_only_synthseg/042/pre_042__synthseg.nii.gz And then run the same command. Easy_reg will create the

Re: [Freesurfer] recon-all mri_convert error: extra argument ("/usr/local/freesurfer/subjects/maoyipeng/mri/orig/001.mgz")

2024-04-01 Thread Huang, Yujing
There is a space in your path ‘/home/pengcuiyi/Desktop/QinLab/MRI_human_brain/severe similar/first_sT1W_3D_TFE_tra_MR350895.nii’. Rename the directory name and try again. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of ??? Sent: Sunday, March 31, 2024 11:18 PM To: