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Hello FreeSurfer Developers,
I found what I believe to be a bug. Typically I can load mgz files into my
Matlab program without any trouble.
But if the path containing the mgz file has a space then I get an error.
When I run this very short script
Hi Shahar
Can you look at the input to that step? Usually it means something prior has
gone wrong (like the skull stripping remove the entire brain or something). And
maybe post a couple of images of the processing (the orig.mgz, the T1.mgz, the
brainmask.mgz, …)
Cheers
Bruce
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You can check the post (quoted below) to verify the setup for the 7.4..1
release. Instead of running the freeview command as listed in the post,
you can run the mri_info command with no arguments to get the help info about
the command line options.
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The thing is that I am specifying the image. I am using the latest version of
freesurfer
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