Re: [Freesurfer] [FreeSurfer] recon-all exited with error - watershed error

2024-05-01 Thread Krystal Xiwing Yau
External Email - Use Caution Dear FS experts, I would like to follow up with the matter here - the T1.mgz isn't generated so I cannot inspect the image as instructed by the wiki page. I have checked the orientation on FreeView but it's correct. Would you please kindly advise?

[Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis

2024-05-01 Thread Dan Levitas
External Email - Use Caution Hello, I wanted to bump this post once more to see if I can get any guidance here. I believe I am close to solving this problem, but I have two lingering questions that are preventing me from moving forward. Thanks again.

Re: [Freesurfer] Registration in PETSurfer

2024-05-01 Thread Douglas N. Greve
bbregister is more sensitive to the smoothing in the PET images. This can create a confound between atrophy and registration. bbregister should only be used on non-smoothed data. On 5/1/2024 5:06 AM, Ruben Dörfel wrote: External Email - Use Caution Hi FreeSurfer Team, I am

[Freesurfer] Registration in PETSurfer

2024-05-01 Thread Ruben Dörfel
External Email - Use Caution Hi FreeSurfer Team, I am currently using PETSurfer to analyze FDG data. Following the guide