Hi,
I studied the FreeSurfer code for MRISinflateBrain and came across a
discrepancy in how the sulcal depth is computed. This explains why the values
are much smaller than expected.
My question @Bruce is if this is intentional or (as the function names below
indicate) possibly a bug in the
Hi,
I am just studying the FreeSurfer open source code (obtained from the read-only
CVS, “dev” branch checkout instructions). It appears there is a slight mistake
in mrisComputeOriginalVertexDistances. The following code computes the
difference between v->y and vn->origy, where it probably
Hi FreeSurfers,
The results of FreeSurfer include a subcortical segmentation and a
segmentation of white matter only. However, there is no segmentation
of (background), cerebrospinal fluid, gray matter, and white matter
only as produced by other tools. Such segmentation is often (as in our
case)
Hi,
We are attempting to use FreeSurfer in order to process a longitudinal
T1 series. Our input data is partly simulated and already skull
stripped.
When running
$ recon-all -autorecon1
on one of these images, the check of the Talairach transformation
fails. Using the option -notal-check
