irach.xfm -rt nearest
>
>
> On 3/27/2020 11:03 AM, Benjamin Ineichen wrote:
>
> External Email - Use Caution
> The space i created from all subjects using make_average_subject.
>
> Douglas N. Greve schrieb am Fr. 27. März 2020 um
> 15:32:
>
>&g
External Email - Use Caution
The space i created from all subjects using make_average_subject.
Douglas N. Greve schrieb am Fr. 27. März 2020 um
15:32:
> What do you mean by "the average space of the subjects"?
>
>
> On 3/24/2020 2:01 PM, B
,
Ben
Am Fr., 6. März 2020 um 18:33 Uhr schrieb Benjamin Ineichen <
bv.ineic...@gmail.com>:
> the space in which the image was aqcuired.
>
> Am Fr., 6. März 2020 um 18:31 Uhr schrieb Douglas N. Greve <
> dgr...@mgh.harvard.edu>:
>
>> what is "native space&
External Email - Use Caution
the space in which the image was aqcuired.
Am Fr., 6. März 2020 um 18:31 Uhr schrieb Douglas N. Greve <
dgr...@mgh.harvard.edu>:
> what is "native space"?
>
> On 3/6/2020 12:09 PM, Benjamin Ineichen wrote:
>
>
External Email - Use Caution
Dear Freesurfer experts,
Even though this problem has been raised in the archives, I was not able to
find a specific solution to my problem.
I installed Freesurfer on a virtual machine which runs Ubuntu 18.04.4 (Host
system: Windows 10). But it seems
o resolve this
> http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
>
>
> On 2/26/2020 4:34 AM, Benjamin Ineichen wrote:
>
> External Email - Use Caution
> Dear Freesurfer experts,
>
> I want to create a new standard template from my study populatio
/Users/benine/Desktop/PVS_validation_cohort/MyelinMS_MRI_export/Freesurfer_output/avgsubject/label/tmpdir.annot2std.38242/seg.1.REMY001_M0/.mgh
as type 3
ERROR: make_average_surface
Thanks!
Am Mi., 26. Feb. 2020 um 10:34 Uhr schrieb Benjamin Ineichen <
bv.ineic...@gmail.com>:
> Dear F
External Email - Use Caution
Dear Freesurfer experts,
I want to create a new standard template from my study population. For
this, I thought about using make_average_subject. Thus, I run:
make_average_subject --out avgsubject --subjects REMY001 REMY002 REMY003
I get an error
External Email - Use Caution
Dear Freesurfer experts,
I ran recon-all on 100 subjects. Around 20 of them needed manual
corrections of the pial surface on the brainmask.mgz.
1.) Can I run the command: "recon-all -make all- s " on all 100
subjects and it will only recon-all the
icom file. We have a tutorial on how to
> find that one file in a subject. See
> http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Practice
>
> On 1/21/20 3:58 PM, Benjamin Ineichen wrote:
> >
> > External Email - Use Caution
> >
> > Dear Freesurfer exper
External Email - Use Caution
Dear Freesurfer experts,
I try to run several subjects one after each other on recon-all using:
for SubjectName in `cat *subs2.txt*`; do recon-all -i
$SUBJECTS_DIR/$SubjectName/* -all -qcache; done
Output:
ERROR: Flag
edu>:
> in this case, I might try mri_vol2vol, something like
> mri_vol2vol --fstal 1 --interp nearest --mov example.mgz --s subject
> --regheader --o example.mni305.mgz
> That is a linear transform. If you want a non-linear, I can walk you
> through that too
>
>
>
External Email - Use Caution
Dear Freesurfer experts,
I have a manual segmentation of a certain brain feature done in Freeview. I
want to pool these segmentations from different subjects to create some
kind of a heat map/probability map.
In order to do this, I assume I need to
External Email - Use Caution
Dear Freesurfer experts,
I run the command
mri_glmfit --table aseg.volume.stats.dat --fsgd GLM7.fsgd dods --C
contrasts6.mtx --glmdir NFL.aseg.glmdir
This gave me the output sig.table.dat. Is there a way to implement an FDR
to this analysis in
14 matches
Mail list logo
