[Freesurfer] Questions regarding atlas labels

2021-03-24 Thread Blanpain, Lou
External Email - Use Caution Hello, I had the following 2 general questions regarding Freesurfer: 1. Is there an extensive list of anatomical labels for each atlas used? For instance, what are all the potential labels used in wmparc.mgz? I am aware of the extensive list of

Re: [Freesurfer] [External] Re: Error using segmentHA_T1.sh

2020-08-27 Thread Blanpain, Lou
ial-anon /Users/lou.blanpain/Desktop/freesurfer_output/ Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of "Blanpain, Lou" Reply-To: Freesurfer support list Date: Wednesday, August 26, 20

Re: [Freesurfer] [External] Re: Error using segmentHA_T1.sh

2020-08-26 Thread Blanpain, Lou
) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of "Blanpain, Lou" Reply-To: Freesurfer support list Date: Wednesday, August 26, 2020 at 20:56 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] Error using segmentHA_T1.sh External Email - U

[Freesurfer] Error using segmentHA_T1.sh

2020-08-26 Thread Blanpain, Lou
External Email - Use Caution Hello, I attempted using segmentHA_T1.sh after running recon-all on a subject, but got the following error: “ Error using segmentSubjectT1_autoEstimateAlveusML (line 72) Side must be 'left' or 'right' “ I am using the following specs: _ platform: