[Freesurfer] Registration and Surafce Flattening

- Original email --- Hi Qiongmin why are you trying to read the patches into matlab? Also, can you send us your full matlab command that generated the error? Sounds like you passed the incorrect file name cheers Bruce On Tue, 27 May 2014, Caka wrote: Thank you Bruce

[Freesurfer] Registration and Surface Flattening

in the flattened space is stored in the patch files so you can always look up what vertex it was on inflated, sphere, etc... cheers Bruce On Mon, 26 May 2014, Caka wrote: Dear Bruce, Doug and all, Thanks for your suggestion, it helped a lot. (1) I load the fsaverage surface (lh.inflated

Re: [Freesurfer] Registration and Surface Flattening

it's called something like lh.cortex.patch.flat) with file-load patch. Then load whatever overlay you want in the same way you would on the inflated surface Cheers Bruce On May 19, 2014, at 10:06 PM, Caka qiongmin...@gmail.com wrote: Hi Doug, Thanks for your suggestion on tksurfer

[Freesurfer] Registration and Surface flatten

surface onto the fsaverage?s 2D map? Is there a command? Best, Qiongmin On 05/13/2014 11:19 PM, Caka wrote: Dear Doug and all, I have already done two things: (1) 'recon-all? to the segmentation for 140 subjects; (2) surface registration to fsaverage template for 1 subject using: mri_surf2surf

Re: [Freesurfer] Registration and Surface flatten

surface onto the fsaverage’s 2D map? Is there a command? Best, Qiongmin On 05/13/2014 11:19 PM, Caka wrote: Dear Doug and all, I have already done two things: (1) 'recon-all? to the segmentation for 140 subjects; (2) surface registration to fsaverage template for 1 subject using: mri_surf2surf

[Freesurfer] mri_surf2surf

Dear Doug and All, I want to register the individual subject surface into the fsaverage surface. I used mdi_surf2surf command. But one error occurred. Could you please help me with this. Here are the scripts: — [root@localhost sub001]#

[Freesurfer] Registration and Surface flatten

Dear Doug and all, I have already done two things: (1) 'recon-all’ to the segmentation for 140 subjects; (2) surface registration to fsaverage template for 1 subject using: mri_surf2surf --hemi lh --srcsubject sub001 --srcsurfval thickness --src_type curv --trgsubject fsaverage --trgsurfval

[Freesurfer] vertex-wise cortical thickness and whole brain labeling

Hi Douglas and all, I have used the ‘recon-all’ command to segment the gray matter of 140 subjects. I have three questions: (1) as the segmentation is done in the individual space, how can I register the results into the template brain? The results includes the surface and the vertex. Is it