[Freesurfer] Postdoctoral Fellowship in Neurobiological Bases of Reading (MRI and DTI)

2018-06-19 Thread Clint Johns
External Email - Use Caution Dear colleagues, POSTDOCTORAL FELLOWSHIP IN NEUROIMAGING (MRI and DTI) The LandiLab (PI: Nicole Landi, PhD https://landi.lab.uconn.edu/) at Haskins Laboratories https://haskinslabs.org/ (which is closely affiliated with Yale University and the Universi

[Freesurfer] Calculating effect sizes using an older version of Freesurfer

2017-05-12 Thread Clint Johns
Using Freesurfer 5.3.0, we assessed correlations. between behavioral measures (e.g., working memory, IQ) and grey matter thickness in a single group of participants. We obtained some results - a significant correlation between measure X and cortical thickness in, say, IFG. We would like to include

Re: [Freesurfer] Fsgd file format

2014-03-31 Thread Clint Johns
g > > > On 3/30/14 9:20 PM, Clint Johns wrote: > > I'm not sure I understand (sorry for being obtuse!) We don't want to check > for interactions among nuisance variables (inasmuch as we only have the one, > the average thickness). Rather, we want to check for interactions

Re: [Freesurfer] Fsgd file format

2014-03-30 Thread Clint Johns
eate a new regressor where you multiply them together. > doug > > > On 3/30/14 4:20 PM, Clint Johns wrote: > > I have a clarifying question about fsgd file format. > We have 40 participants, and a large battery of individual difference > measures (egg., vocabulary, pho

[Freesurfer] Fsgd file format

2014-03-30 Thread Clint Johns
I have a clarifying question about fsgd file format. We have 40 participants, and a large battery of individual difference measures (egg., vocabulary, phonological skill, etc.) We applied a PCA to the battery and found 4 components, corresponding to WMC, processing speed, comprehension ability, and

Re: [Freesurfer] Difference in ROI analysis results?

2014-03-28 Thread Clint Johns
have gone wrong in the transfer to each subject. I > would recommend extracting the data directly out of the input file > (y.mgh) using mri_segstats with --slabel, especially if the label is small. > > On 03/28/2014 12:15 PM, Clint Johns wrote: >> Hi there, >> >>

[Freesurfer] Difference in ROI analysis results?

2014-03-28 Thread Clint Johns
Hi there, After conducting a DODS analysis (One group, four factors, one covariate), we were able to identify a region (LH pars opercularis) whose mean thickness differed when two of the four factors interacted. In order to further investigate the interaction, we obtained each participant's mean t

[Freesurfer] Extracting ROI information using created label

2014-03-27 Thread Clint Johns
Hi, We are having some trouble extracting ROI (thickness) information using a label we created. After conducting a group analysis, we drew an ROI label based on the results. We used tksurfer to draw the label (we couldn't do this in freeview, which would freeze for some reason). However, at this