Bl32vITG_77ibtO3YwKokZL9vz-PcxXYRKf3CfhTe9-zVIwpP0gO9cpwQY2C4871TrcCqjugL2aWgMRVvRNDJKGRV7gnceJnYmyG46kw49v-Fwb6BxqwRCRl8y7svy9w3AGhwSm62l7gv2mDj8d8Q_zLIsKzO1FfcpyTKrpNb8kW6SL7dyErUDRn2ALuoAkuFpVFc5Hig8jaSByrZYV5CtqnjQ9sSiAOkwqi7z3eij1-tn_auVTh4qiJvU0JV4ASqtLlZChaQA/http%3A%2F%2Fwww.jeiglesias.com
>
> O
mI28KrJsxObJ-pJjn0aT42elUDeQDY-VOqdDAsm_XCSLk6O0cQQsHQZ_WeLdLkkSP0ZqAF22pxtjRYWOS_mGB4DgjcwDWt2LSx_Vl4dfFH7q6x0dS6wAUxGejm01T0GyOn03KUjtR1Y7XZ1AVi0U9kSfev4sOmBR8c1iZDmEC4jy_1ZRJ6fDyEI8ZlK8tFektA/http%3A%2F%2Fwww.jeiglesias.com
>
> On May 28, 2021, at 12:20, Daniel Davidson Callow wrote:
>
> E
jatHKyZUaaQ4wSAHDh_rwH1615JlqcHfPYywTwRzVbI_to9hVZq--leXJy2p4Zrh_mUI3lNII4SXa870Dh3HPFfDvztZQqR8Lzb5jZgrooucfAyVmWEBNMCuB8-mMhkfQpliBwpQ4AlrLgpwXKROaATxslozZ45t7me-SsaBv2pGfPGHhefMDQiyWYTTwRkiWX5UsaBqKv7GznpWuae2cijb7yGp0Ot534fYLsrPfsPuzrmK7NMQ/http%3A%2F%2Fwww.jeiglesias.com
>
> On May 28, 2021, at 07:53, Daniel Davidson Callow wrote:
External Email - Use Caution
Hello,
I am running into errors when running
segmentHA_T2.sh ${subj}
/data/bswift-1/dcallow/aging/freesurfer/${subj}/mri/T2.norm.mgz T2 1
Approximately 10% of my subjects are being processed but for some reason,
the majority fail to execute. Here is
External Email - Use Caution
Hello,
I am running into errors when running
segmentHA_T2.sh ${subj}
/data/bswift-1/dcallow/aging/freesurfer/${subj}/mri/T2.norm.mgz T2 1
Approximately 10% of my subjects are being processed but for some reason,
the majority fail to execute. Here is
External Email - Use Caution
Hello,
I have run through dt_recon and want to use anatomically based
segmentations (aseg) to create ROIs for the diffusion-weighted data using
mri_vol2vol.
I ran
mri_vol2vol --mov $subj_dir/dtrecon/${subj}.${cond}./lowb.nii.gz --targ
External Email - Use Caution
Hello,
I ran a successful dt_recon and then wanted to use
mri_vol2vol --mov $subj_dir/dtrecons/${subj}.${cond}/lowb.nii.gz --targ
$subj_dir/diffusion_recons/${subj}.${cond}/mri/aparc+aseg.mgz --inv
--interp nearest --o
On Wed, Feb 13, 2019 at 3:04 PM fsbuild wrote:
> Hello Daniel.
>
> It looks like you need a slash in front of Volumes for the path after —I
> /Volumes
>
> - R.
>
> On Feb 13, 2019, at 14:44, Daniel Davidson Callow wrote:
>
> External Email - Use Caution
&g
External Email - Use Caution
Hello,
I am trying to run dt_recon on my dti data using the following script.
dt_recon --debug --i
Volumes/DANIEL/tutorial_data/diffusion_recons/${subj}.${cond}/1-65.dcm --s
${subj}.${cond} --o /Volumes/DANIEL/tutorial_data/dtrecon
with the
