Hi everyone,
We have a number of Freesurfer segmentations performed with version 5.0.
Some of these will need to be corrected, most likely with adding control
points.
The question is we currently have version 5.3 running on our server. Is it
okay to add the control points and run the segmentation
t, Martin
>
>
> On 04/03/2013 12:40 PM, Bruce Fischl wrote:
>
> Hi Deniz
>
> yes, mri_convert or mri_vol2vol should be able to do this. e.g.
> mri_convert -at
>
> cheers
> Bruce
>
>
> On Wed, 3 Apr 2013, Deniz Ozgen wrote:
>
> I registered
I registered two images using mri_robust_register.
Is possible to apply the same transformation to another image (a mask) in
the same space as the initial "mov" image? (using the lta files?) I could
not find the information in Freesurfer site.
Thanks
Deniz
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tips or hints on good placement of
control points, besides the ones on the tutorial. Trial and error is
suggested in the tutorial but considering the time it takes to re-run
each subject, it is too time consuming.
Thanks in advance.
Deniz Ozgen
, is there an additional option or is it able to it
by default? I searched the email archive but I couldn't find much
information on this topic.
Thanks in advance.
Deniz Ozgen.
___
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Freesurfer@nmr.mgh.harvard.edu
Hello All,
Looking at aparc+aseg of some subjects we see some regions of the
cortex labeled as "unknown" especially in the medial region / temporal
lobe, close to amygdala. Additionally, around these regions there are
some regions of the cortex that are not labeled at all. We see this on
images ac
Hello all,
I am new to FreeSurfer and still trying to understand how things work.
I am currently trying to understand how the manual correction works.
Following the online tutorials I was able to fix the brainmask and
wm.mgz, and also add control points in the wm so that low intensity wm
is also
