[Freesurfer] San Diego NIAAA T32 Postdoc Opening

2018-03-05 Thread Eileen Moore
San Diego NIAAA T32 Postdoc Position Opening Announcement A postdoctoral position in alcohol research is available now through an NIAAA T32 institutional training grant between SDSU and UCSD in San Diego, CA. Postdoctoral appointees are supported for twelve-month, full-time appointments with

Re: [Freesurfer] Tracula: missing or incomplete tracts

2015-02-27 Thread Eileen Moore
, and then dilating it by a couple of voxels. If you upload an example data set for me here, I can take a look: https://gate.nmr.mgh.harvard.edu/filedrop2/ Please include all tracula-related directories of the subject (dmri, dlabel, etc). Thanks! a.y On Thu, 18 Dec 2014, Eileen Moore wrote

[Freesurfer] Tracula: missing or incomplete tracts

2014-12-18 Thread Eileen Moore
Hi - I'm having difficulty with missing or incomplete tracts most of my subjects. I'm hoping for suggestions on where I can look for data problems. The majority of my subjects have at least one missing/incomplete tract, but the specific problematic tract varies across subjects (e.g., one subject

Re: [Freesurfer] trac-all -prep error field map error

2014-09-05 Thread Eileen Moore
From: Eileen Moore eimo...@mail.sdsu.edu Subject: Re: [Freesurfer] trac-all -prep error field map error To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Message-ID: CA++dajQo_2EF= lvufckbs+_061v7dctfc5t11pn0k4g9d-c...@mail.gmail.com Content-Type: text/plain; charset=utf

Re: [Freesurfer] trac-all -prep error field map error

2014-08-27 Thread Eileen Moore
giving trac-all the phase difference maps you have and let's see what happens. Best, a.y On Wed, 16 Jul 2014, Eileen Moore wrote: Hi Anastasia, OK - our imaging physicists had developed a wrapper script around epidewarp which takes our dicom images and converts them into the phase

Re: [Freesurfer] trac-all -prep error field map error

2014-07-16 Thread Eileen Moore
this helps, a.y On Sat, 12 Jul 2014, Eileen Moore wrote: Hi - I'm using freesurfer 5.3 on an Ubuntu operating system. I'm tyring to run tracula on some? images acquired from a GE scanner. I am running into problems when I try to perform the registration-based B0-inhomogeneity compensation

[Freesurfer] Generating individual statistics on a manually traced segmentation/label

2014-03-23 Thread Eileen Moore
Hello FreeSurfer experts, I am using freesurfer v5.3 on a linux os. I have a few questions regarding individual aseg statistics (volume, intensity) for a subcortical region that is not automatically segmented by freesurfer. Using tkmedit I have manually traced my subcortical ROI and saved it