Hello Experts,
I was wondering if there is a way to short time of recon-all; I see that by
using some of the parameters, one can get rid of different outputs. For mne
forward models and inverses is there a recommended list of necessary and
unnecessary outputs?
Isaiah Smith
Hello,
There is some flaw in my segmentation that is not allowing me to change produce
a mesh in MNE. How do I fix the segmentation in freesurfer so that skull
surfaces do not overlap?
Isaiah
(Error Shown Below)
Checking that inner skull surface is inside outer skull surface...[failed]
Surface
I have the MRI data, but I am confused as to how to proceed with the
mne_setup_mri for the brain, skull and scalp volume conduction models because
the brain and T1 are the defaults. Do I need to add some other slices? And does
the subject data need to be placed in /freesurfer/subjects for it to
cheers
Bruce
On Thu, 31 Jul 2014, Isaiah C. Smith wrote:
Yes, how do i view the files and where can I find where every has been placed
On Jul 31, 2014, at 8:26 AM, Bruce Fischl
fis...@nmr.mgh.harvard.edumailto:fis...@nmr.mgh.harvard.edu wrote:
there are many, many files in many different formats
Bruce
On Wed, 30 Jul 2014, Isaiah C. Smith wrote:
The command is not found.
Last login: Tue Jul 29 17:42:52 on ttys001
freesurfer-Darwin-lion-stable-pub-v5.3.0
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer
FSFAST_HOME
The files after recon-all
On Jul 31, 2014, at 7:10 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu
wrote:
the format of what?
On Thu, 31 Jul 2014, Isaiah C. Smith wrote:
Thank you,
I will go there now. But regarding the output of freesurfer, the format will
be .ccd?
On Jul 30, 2014
, parcellations,
etc...)
On Thu, 31 Jul 2014, Isaiah C. Smith wrote:
The files after recon-all
On Jul 31, 2014, at 7:10 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu
wrote:
the format of what?
On Thu, 31 Jul 2014, Isaiah C. Smith wrote:
Thank you,
I will go there now. But regarding the output
Thanks
Sent from my iPhone
On Jul 31, 2014, at 10:47 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu
wrote:
Hi Isaiah
you should go through the tutorials on our website - they detail all this
information
cheers
Bruce
On Thu, 31 Jul 2014, Isaiah C. Smith wrote:
Yes, how do i
Jul 2014, Isaiah C. Smith wrote:
Hello Bruce,
Thanks for the response; I tried the inputs from the check freesurfer page.
I just tried to do the run recon-all and got the list of possible commands.
The input images are unix executable files separately, but I can convert
them to .hdr/.img or .nii
and segmentations)
cheers
Bruce
On Thu, 31 Jul 2014, Isaiah C. Smith wrote:
Thank you so much, Bruce. I think that I got it. Overall, I am trying to
create a source volume conduction model, calculate the lead field matrix,
and then create a source model. My instructor said
* file in the right
dicom series, or a .nii file. Don't use analyze
Bruce
On Tue, 22 Jul 2014, Isaiah C. Smith wrote:
Hello Bruce,
Thanks for the response; I tried the inputs from the check freesurfer page.
I just tried to do the run recon-all and got the list of possible commands.
The input images
do the trick. input file should be a *single* file in the right
dicom series, or a .nii file. Don't use analyze
Bruce
On Tue, 22 Jul 2014, Isaiah C. Smith wrote:
Hello Bruce,
Thanks for the response; I tried the inputs from the check freesurfer page.
I just tried to do the run recon-all and got
, Isaiah C. Smith wrote:
Hello Bruce,
Thanks for the response; I tried the inputs from the check freesurfer page.
I just tried to do the run recon-all and got the list of possible commands.
The input images are unix executable files separately, but I can convert
them to .hdr/.img or .nii using
Hello All,
I was testing to see if the freesurfer program works and it does seem to work
for anything besides the free viewer program. I do not know what is wrong with
the others; do you have any ideas? Also I am trying to use the inhomogeneity
correction, convert the images that I have to
)
cheers
Bruce
On Tue, 22 Jul 2014, Isaiah C. Smith wrote:
Hello All,
I was testing to see if the freesurfer program works and it does seem to work
for anything besides the free viewer program. I do not know what is wrong with
the others; do you have any ideas? Also I am trying to use
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