[Freesurfer] custom templates and mris_make_template options

2008-08-24 Thread Jan Kalkus
\ lh.monk_temp_all.tif Has anyone else used this process to create their own templates/ registered surfaces? Does anyone have any suggestions? Thanks. - Jan Kalkus ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] custom templates and mris_make_template options

2008-08-24 Thread Jan Kalkus
shouldn't be using *h.sphere.reg (instead of *h.sphere) for the input surface after the first round? Thanks. - Jan Kalkus On Aug 24, 2008, at 10:15 PM, Bruce Fischl wrote: Hi Jan, you should use the ?h.sphere.reg on the 2nd round. On our 1st round we use a single subject

Re: [Freesurfer] deflate compression support

2008-07-09 Thread Jan Kalkus
No such file or directory Is there an updated 'mris_register' binary too that I could get a hold of? Thanks. - Jan Kalkus On Jul 8, 2008, at 6:51 PM, Nick Schmansky wrote: Jan, It appears that the libtiff used to build mris_make_template did not have deflate (zip) support

Re: [Freesurfer] error message of mris_register

2008-07-09 Thread Jan Kalkus
: TIFFReadScanline returned error No such file or directory MRISPread(/Volumes/Data/monkey_surface_data/monk_temp0.tif): could not open file No such file or directory mris_register: could not open template file /Volumes/Data/ monkey_surface_data/monk_temp0.tif No such file or directory - Jan Kalkus

Re: [Freesurfer] error message of mris_register

2008-07-09 Thread Jan Kalkus
On Wed, 2008-07-09 at 11:14 -0400, Jan Kalkus wrote: I have also been having similar trouble with mris_register: [dynamic-oit-vapornet-c-124:Data/monkey_surface_data/bu_edited] work% mris_register surf/rh.sphere $SUBJECTS_DIR/monk_temp0.tif surf/ rh.sphere.reg $Id: mris_register.c,v 1.48 2007/07

[Freesurfer] deflate compression support

2008-07-01 Thread Jan Kalkus
compression support is not configured. TiffWrite: TIFFWriteScanline returned error I am working on an intel MacBook with OS X 10.5.4 and I'm running freesurfer-Darwin-leopard-i686-stable-pub-v4.0.5. Has anyone else encountered this problem? Does anyone have any suggestions? Thanks - Jan

Re: [Freesurfer] deflate compression support

2008-07-01 Thread Jan Kalkus
ports: http://tiff.darwinports.com/ 2008/7/1 Jan Kalkus [EMAIL PROTECTED]: I have libtiff 3.8.2. On Jul 1, 2008, at 12:06 PM, Pedro Paulo de Magalhães Oliveira Junior wrote: Some versions of LibTiff have the zlib compression support disabled. Do you have an older version of LibTiff in your

[Freesurfer] monkey template

2008-06-25 Thread Jan Kalkus
Hi, I'm trying to construct a surface registration template with some monkey data and I was wondering if anyone could clear up some confusion I had. Can anyone tell me what the difference between mri_make_template and mris_make_template is? Thanks, Jan Kalkus

[Freesurfer] Deflate compression support

2008-06-25 Thread Jan Kalkus
file, but I keep getting the same message. Does anyone have any suggestions? - Jan Kalkus ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer