Re: [Freesurfer] installation help

Tel: (604) 822-3120 Fax: (604) 822-6923 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- John Sheppard Undergraduate Student Department of Biomedical Engineering

Re: [Freesurfer] 4.1.0 on Ubuntu 8.04

://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- John Sheppard Undergraduate Student Department of Biomedical Engineering Northwestern University Phone: (630) 957-8321 E-mail: john-shepp...@northwestern.edu Address: 1927 Orrington Ave. Rm 8203 Evanston, IL 60201

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

.mgz orig/ Thanks Krish On Oct 22, 2008, at 10:01 PM, John Sheppard wrote: Hey everyone, I'm having some issues trying to run the volume pipeline using .BRIK input from afni (hence running mri_convert command directly). The problem occurs at the end of mri_convert at the very beginning

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

Also, in case anyone is interested -- if you have a brik volume in the subject folder, specifying mri/orig/001.mgz gives the same error as specifying orig/001.mgz, at least for me. So that wasn't the cause of the problem. John On Thu, Oct 23, 2008 at 7:44 AM, John Sheppard [EMAIL PROTECTED

[Freesurfer] Question about mri_ca_normalize

these normalization commands. I'm also looking at the mri_nu_correct.mni command which was taken from MNI - haven't had much luck there but I've been messing with the iteration number (and trying removing it completely). Thanks in advance! -- John Sheppard Undergraduate Student (Class of 2010