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Hi FS Forum,
I am posting because after using the command mri_vol2surf to downsample
my scans to fsaverage4, I ended up with empty files when viewed in Freeview.
This is the command that I ran generally:
mri_vol2surf --src bold_preproc.nii.gz --out
)
On 3/18/2021 11:38 AM, Karan Desai wrote:
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Hi Freesurfer List,
I am running fMRIPrep and getting the first two FS output files (aseg and
aparcaseg seen above in the screenshot), but not the actual file I need which
is the one where it is resampled
External Email - Use Caution
Hi Freesurfer List,
I am running fMRIPrep and getting the first two FS output files (aseg and
aparcaseg seen above in the screenshot), but not the actual file I need which
is the one where it is resampled to the mesh. I have run fMRIPrep and have
. Greve
Sent: Thursday, January 28, 2021 5:06 PM
To: Karan Desai ; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Using mri_surf2surf to split files
Sorry, can you include the previous correspondence so that I have context.
Also, please remember to post to the list
On 1/28/2021 12:07 PM
this in Freesurfer?
From: Karan Desai
Sent: Wednesday, January 27, 2021 1:18 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Using mri_surf2surf to split files
Hi FreeSurfer developers,
I have preprocessed files in single niftis and would like to split the data for
each file
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Hi FreeSurfer developers,
I have preprocessed files in single niftis and would like to split the data for
each file into left and right hemispheres to run it through a specific toolbox.
It seems like there should be a way to run mri_surf2surf or
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Hi FreeSurfer developers,
I have Freesurfer anatomical data from recon-all, and pre-processed functional
data in NifTI format from FSL and you would like to use FsFast to align that
data. What would be the best way to do that using FsFast? Is this
