[Freesurfer] Exception caught for createMorph

2015-08-05 Thread Matt Leonard
Hi, I'm trying to apply a transform that was generated between a native subject's T1 and the cvs_avg35_inMNI152 brain. Per the instructions on the mri_cvs_register page, I ran the transformation, but did not save the .fullCVSmorph.t3md file, so I'd like to regenerate it. Here's my command for

[Freesurfer] mri_ca_register error

2012-10-24 Thread Matt Leonard
Hello, I'm trying to run a simple recon on a single T1 dataset, and am not interested in any quantitative measures (this is just for data presentation and eventual MRI/CT co-registration). To save time, I tried to skip the CA registration step, but got the following error:

[Freesurfer] fsaverage Talairach Coordinates

2009-08-19 Thread Matt Leonard
Hi, I've been asked to report Talairach coordinates in a paper, but I've been told that the coordinates that are listed on the fsaverage brain (in the talairach.xfm file) are not accurate. Does anyone have a way to get the true Talairach coordinates on the fsaverage brain? Thanks, Matt

Re: [Freesurfer] fsaverage Talairach Coordinates

2009-08-19 Thread Matt Leonard
and tksurfer. Does this answer your question? doug Matt Leonard wrote: Hi, I've been asked to report Talairach coordinates in a paper, but I've been told that the coordinates that are listed on the fsaverage brain (in the talairach.xfm file) are not accurate. Does anyone have