[Freesurfer] mris_anatomical_stats

2020-08-31 Thread Palin, Tara
External Email - Use Caution When using the following command line: mris_anatomical_stats -th3 -mgz- cortex ../label/?h.cortex.label -f ../stats/?h.aparc.pial.stats -b -a ../label/?h.aparc.annot -c ../label/aparc.annot.ctab subject ?h pial do we generate a pial surface area

Re: [Freesurfer] Global surface area and global thickness values {Disarmed} {Disarmed}

2020-08-26 Thread Palin, Tara
area is the sum of all the triangles that have all three corners in the cortex.label On 8/24/2020 9:35 AM, Palin, Tara wrote: External Email - Use Caution I was asking if the Mean Thickness value and the Pial Surface Area values at the top of the aparc.stats file that is generated when

Re: [Freesurfer] Global surface area and global thickness values {Disarmed} {Disarmed}

2020-08-24 Thread Palin, Tara
over all the vertices in the cortex.label The total surface area is the sum of all the triangles that have all three corners in the cortex.label On 8/24/2020 9:35 AM, Palin, Tara wrote: External Email - Use Caution I was asking if the Mean Thickness value and the Pial Surface Area values

Re: [Freesurfer] Global surface area and global thickness values {Disarmed}

2020-08-24 Thread Palin, Tara
the content is safe. I'm not sure what your question is. You can't just average the ROI values to get the global value unless you weight by the ROI size. On 8/21/2020 2:55 PM, Palin, Tara wrote: External Email - Use Caution Hello freesurfer experts, I am

[Freesurfer] Global surface area and global thickness values

2020-08-21 Thread Palin, Tara
External Email - Use Caution Hello freesurfer experts, I am looking to extract the global surface and global thickness measurements and am curious if my understanding of the output on the aparc.stats (for lh and rh) are correct. When looking at these files, at the very top you