[Freesurfer] freesurfer *.deb-packaging

2013-12-11 Thread Peter Wendorff
tools /trctrain ? I would apprechiate your help, even if incomplete. regards Peter Wendorff C-Lab, Paderborn ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman

Re: [Freesurfer] Is there anyway to define multiple processing cores for FreeSurfer to speed up its commands?

2013-11-07 Thread Peter Wendorff
Hi Emad, If there is something like that I would be quite interested in a way to do so as well as I'm working on a scalable Freesurfer cloud setup, but all I know so far is, that you can parallelize parts of the freesurfer pipeline to two parallel tasks. I think it's autorecon2, probably even

[Freesurfer] ASeg Stats is done twice?

2013-09-11 Thread Peter Wendorff
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi. I try to get information about the progress of my subjects out of the log files, writing a script that reports about the progress and sends progress messages. For that I try to get the individual stages as progress indicator from the

Re: [Freesurfer] DEPRECATED warning in Freesurfers

2013-06-03 Thread Peter Wendorff
Am 15.05.2013 16:18, schrieb Peter Wendorff: Hi Bruce. Thanks - kind of... Can you point me to anybody working on that stuff there currently? The cprresponding code is from 1996, and according to the MNI website, it's author John Sled isn't there any more. Who's the maintainer

Re: [Freesurfer] DEPRECATED warning in Freesurfers

2013-06-03 Thread Peter Wendorff
:29, schrieb Bruce Fischl: Hi Peter, did you mean MNI when you said MRI? I think that they are still maintaining it - I would be surprised otherwise Bruce On Mon, 3 Jun 2013, Peter Wendorff wrote: Hi again. So: is the MRI stuff dead code? I wrote an email to Jennifer Chew asking

[Freesurfer] DEPRECATED warning in Freesurfers

2013-05-15 Thread Peter Wendorff
useful. How can I submit this as a patch? Is it enough to report here? What to do? regards Peter Wendorff P.S.: For referene the header parameters of my sharpen_volume for revision comparison: # #$RCSfile

Re: [Freesurfer] DEPRECATED warning in Freesurfers

2013-05-15 Thread Peter Wendorff
submit this as a patch? Is it enough to report here? What to do? regards Peter Wendorff P.S.: For referene the header parameters of my sharpen_volume for revision comparison: # #$RCSfile: sharpen_volume.in,v