Dear Freesurfer list,
Using the optseq2 program, is it possible to calculate the efficiency of a
custom par file? I have an fMRI task that will be split into three blocks.
I want to calculate the overall efficiency of my overall design
byconcatenating the best par file from optimizing each
are you running this from a unix/linux command line? The >> usually means
> matlab. In any case, it looks like $CTAB is not being expanded by the
> shell. Try using echo to see what the actual command is.
>
> cheers
> Bruce
>
>
> On Thu, 10 Sep 2015,
> Sam Zorowitz
t; you using?
>
> On Thu, 10 Sep 2015, Sam Zorowitz wrote:
>
> Hi Bruce,
>> Thank you for the reply. I had been running it through python. After
>> running the command from the
>> command line, however, I am still receiving the same error.
>>
>> Best,
>>
Hi all,
I am trying to make a custom annotation file. In doing so, I have created a
custom color lookup table. I have attached the CLUT. I run the following
command:
>> mris_label2annot --subject $SUBJ --hemi $HEMI --ctab $CTAB --a $OUT --l
label_1 --l label_2 ... --l label_n
And I receive the
Hi all,
I am using mri_watershed to create skull surfaces for a cohort of subjects
for whom we were unable to collect a FLASH sequence. To improve the
estimation of the inner skull layer, I would like to use edited brainmasks.
However whenever I supply the -mask flag, and only when I supply -mask
surfaces without it
creating a new brain mask?
Sam Zorowitz
Clinical Research Coordinator
Division of Neurotherapeutics
Department of Psychiatry: Neurosciences
Massachusetts General Hospital
149 13th Street, Rm 2620e
Charlestown, MA 02129
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