: Sita Kakunoori s...@nmr.mgh.harvard.edu
Sent: Apr 7, 2010 12:55 PM
To: Sherri Novis echot...@earthlink.net
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Pial Surfaces Cutting off Gyri
Hi Sherri,
one of the control points seems to be in gray matter, which is probably
causing
others?
Thank you -
Sherri
-Original Message-
From: Bruce Fischl fis...@nmr.mgh.harvard.edu
Sent: Apr 7, 2010 1:15 PM
To: Sherri Novis echot...@earthlink.net
Cc: Sita Kakunoori s...@nmr.mgh.harvard.edu, freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Pial Surfaces Cutting off Gyri
Hello,
I have a series of datasets with skull stripping issues - namely left over
dura/vasculature in the occipital cortex, and some in frontal areas.(Attached
is a jpeg of the type of issue. It's pervasive throughout the slices, across a
handful of subject data.)
I have rerun skull
Hello -
I have two questions:
1) I noticed on wm.mgz volumes that were segmented properly, that even when the
ventricles were
automatically filled in, on some slices they are somewhat patchy (partially
filled in with white, with some black/blank voxels).
Do these patchy wm fill-ins require
Hello -
I am trying to compare normalized segmentation stats across groups. We are
adding control points to the white matter in an attempt to push out the pial
surfaces when it appears grey matter has been clipped or cut short.I am
loading the following:
tkmedit [SubjectID]
Hello -
I am comparing aparc stats across several groups of data, and just noticed that
recently processed groups do not have corpus callosum values... which made me
wonder if different versions of freesurfer will produce different aparc data...
Can aparc stats from an older version of
Hello - can anyone tell me where I can find details on what aseg stats include
and exclude from each measurement? The ones I need in particular are:
Left-Cerebral-White-Matter Left-Cerebral-Cortex and IntraCranialVol. I'd
like to understand if L-Cereb-Cortex means just gray matter,
