[Freesurfer] mri_glmfit-sim for interhemispheric comparison

2012-12-06 Thread Shigetoshi Takaya
Hi Doug, I did surface-based inter-hemispheric comparison. I used an arbitrary surface data (.mgz) resampled from a volume data (.nii), otherwise I follow the instruction. http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi I got a good result

Re: [Freesurfer] mri_glmfit-sim for interhemispheric comparison

2012-12-06 Thread Shigetoshi Takaya
, 2012 11:59 AM To: Shigetoshi Takaya Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: mri_glmfit-sim for interhemispheric comparison Shige, it is looking for tables of cluster p-values (the csd files). When you followed the wiki instructions, did you tell it to use fsaverage_sym as the target

[Freesurfer] Surface-based normalization, smoothing and averaging

2012-10-25 Thread Shigetoshi Takaya
Dear Freesurfer experts, I would like to have your help. I have a volume data of a certain parameter on white/grey matter boundary (X.nii). What I want to do are as follows: Step 1: I want to register it onto a standard space using surface-based alignment and smooth it. Step 2: I want to

[Freesurfer] Table for aparc+aseg

2011-10-07 Thread Shigetoshi Takaya
Dear FreeSurfers, In aparc+aseg file, each segmented or parceled region seems to be labeled by its own intensity (e.g. the intensity is 53 in the right hippocampus, 10 in the left thalamus...) when I see it on FSL viewer. Where can I find the table that shows the relationship between the