d.edu on behalf of
Bruce Fischl" wrote:
Hi Sara
we will need to know the actual commands and the screen output from them
that you ran
cheers
Bruce
On Mon, 14 Oct 2019, Sims, Sara A (Campus) wrote:
>
> External Ema
External Email - Use Caution
Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into a
volume and then into a surface with 1s inside the label and 0s outside the
label. I want to make a connectivity map surface overlay with values only
within my
t 12:07 PM
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] Extracting mean of values within a lable
look at mri_segstats. Run it with --help to get examples. Note that if your
input volume has multiple frames, you can use --avgwf to get means of all the
frames
On 4/19/2019 4:46 PM,
External Email - Use Caution
Hello!
I have a surface overlay that I want to extract the mean of the values within a
label and export to a text file. How can I do that?
I was looking into mris_anatomical_stats, but does mris_anatomical_stats let
you tell it what file to pull the
, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
Greve, Douglas N.,Ph.D." wrote:
Can you run it with --debug as the first option, capture the terminal
output, and send it to me?
On 4/2/19 4:02 PM, Sims, Sara A (Campus) wrote:
>
> External Ema
u just cut and paste them into the email. And are you sure
you're running the new command?
On 3/29/19 6:59 PM, Sims, Sara A (Campus) wrote:
External Email - Use Caution
I have attached them here.
Sara Sims
Graduate Research Fellow
University of Alabama at Birmingham
Department of
that and then click on a point in the surface, you should be
able to see a waveform of the measurements for all inputs. See if there
is one that is always 0. If you don't find any, then repeat with
--paired-diff
On 3/19/19 3:30 PM, Sims, S
here: /autofs/space/nihilus_001/CICS/ACRsoftware/ACRcurrent
On 3/18/19 11:12 AM, Sims, Sara A (Campus) wrote:
External Email - Use Caution
Hello!
I have 786 subjects that I am trying to do a paired difference analysis using
mri_glm. I am getting stuck at the mris_preproc stage.
External Email - Use Caution
Hello!
I have 786 subjects that I am trying to do a paired difference analysis using
mri_glm. I am getting stuck at the mris_preproc stage. I have tried running it
on a handful of subjects and it works wonderfully. However, when I run it on
all the
