Hi all,
I also had this same problem with -T2pial, posted on the archives back in
March. I, too, have a log where mri_convert is given an input of ERROR: could
not determine file for ..., and I believe I've traced it back to this early
line in bbregister (our copy is dated at 2/23/2013,
Hi all,
Congrats on the new version! I've been excited to see how the use of data from
T2 images could help pial surface estimation, but I'm encountering a problem
with getting that to work. It seems to be failing to properly execute the
bbregister command built into this part of the new
Hi again,
We have had some suboptimal results from FreeSurfer's skullstripping algorithm,
even after iteratively trying different watershed thresholds and after checking
the quality of Talairach registration. The results are pretty good, but often
leave some dura matter and bits of neck
Hi all,
Back in January and October Bruce mentioned that he had under development some
scripts designed to utilize T2-SPACE images for better pial surface
reconstruction in the presence of dura -- I was just wondering if any of that
is ready for trial?
Thanks!
Warren
--
Warren Winter
Hi all,
I'd like to jump in on this topic and ask if I might be able to get any general
information or documentation on how the two atlases were generated, as I've
found that using the 2008 GCA file (with FreeSurfer 5.0 stable) results in less
accurate segmentation of putamen and immediately
Hi,
I have a few questions about the process flow for the last stable build
(5.0.0). After looking over http://surfer.nmr.mgh.harvard.edu/fswiki/recon-all
, https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable , and
http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags , it looks
