Hi Zeke,
Thanks for you reply.
It's great to hear about the release of version 6. Could you give a more
specific timepoint for the new release? I may prefer the new one.
And thanks for the solution for the version 5.3. If the new version may
take more time, I'll try this one first. Thanks.
Hi,
I have a similar problem. My opensuse version is 13.2. Could you help how
to sovle this invilad license problem? Thanks.
Best,
Xiangzhen
On Tue, Aug 16, 2016 at 3:05 PM, wrote:
> Hello Lee,
>
> Opensuse platforms versions greater than 12.1 are not compatible
, something was printed out. "ERROR: Invalid FreeSurfer
license key found in license file x/freesurfer/license.txt"
Please help.
Thanks,
Xiangzhen
--
-
Kong Xiangzhen
State Key Laboratory of
Hi, all.
Is there any FS tool for extracting the thickness value of a peak vertex ?
From glmfit, I have got the vertex index of the peak.
Thanks.
Best,
Xiang-zhen
【小孔成像】http://www.conxz.net___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
Thanks very much.
Another problem, do you know why the color bar is inversed in my first email?
Might it be related to the right-left weird problem?
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 11:18
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer
Do you mean the threshold?
min=2.0
max=5.0
Thanks!
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 20:57
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: Re: [Freesurfer] tksurfer display problem
sorry, I didn't notice that. What were your min and max set to?
On Fri, 28
Jun
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 21:56
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
can you resend the image? You don't have the invert button clicked, do
you?
On Fri, 28 Jun 2013, Xiangzhen Kong wrote:
Do you mean
in centos5.7)
PS: tkmedit works well with volumetric data. And freeview also works well.
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 22:29
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: Re: [Freesurfer] tksurfer display problem
it's on the configure overlay window, but it wouldn't
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage lh inflated -overlay ./fwhm10lh/c1.contrast/sig.mgh
That is, I want to display the result of the left hemi.
However, to my surprise, the plot seems like on the right hemi of the brain.
In addition, the color bar
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
Are you sure you didn't accidentally copy the rh over lh
On Jun 27, 2013, at 9:31 PM, Xiangzhen Kong bnu...@gmail.com wrote:
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage
Hi, all.
I have come across a problem when using mri_glmfit.
We know that the output format is controlled by the $FSF_OUTPUT_FORMAT.
I have checked that in my environment, $FSF_OUTPUT_FORMAT is nii.gz. But the
output fils are all in mgh format.
How can I get output files in nii.gz?
Thanks!
Thanks for your rapid reply .
best!
Xiangzhen Kong
发件人: Anastasia Yendiki
发送时间: 2012-06-07 23:19
收件人: Xiangzhen Kong
抄送: freesurfer
主题: Re: [Freesurfer] 回复: Re: /path/to/dmri/dwi_orig_flip.mghdti.bvecs': No such
file or directory
Hi Xiangzhen - Currently mri_convert does not support
the DICOM header?
thank in advance.
Xiangzhen Kong
From: Anastasia Yendiki
Date: 2012-02-04 00:52
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] /path/to/dmri/dwi_orig_flip.mghdti.bvecs': No such
file or directory
Unless your dicoms came from the same acquisition as the default
Hi, all~
I use trac-all with .nii data, not dicom. So I have to specify the bvecs and
bvals in the config file.
Trac-all requires a bvecs file in 3 columes, but FSL need that in 3 raws.
I wonder what does trac-all do on the bvecs file that I specify.
And I have check the code 'trac-preproc' and
'dwi_orig_flip.nii.gz'
, 'dwi_orig.nii.gz' and a dir 'xfms'.
Does trac-all extract bvals/bvecs automatically when start with DICOM data?
My data is from a siemens scanner.
Thanks!
Xiangzhen
2012-02-03
Xiangzhen Kong
___
Freesurfer mailing list
the orientation of DWI is LPS, we have to transform data to RAS.
($fslplipx=1)
The first sign = +-+ and the second sign = --+.
So I have to multiple the bvecs(extracted from DICOM) by [-1 -1 +1], but NOT
[+1 -1 +1].
Why are they different?
Thanks!
2012-02-04
Xiangzhen Kong
发件人: Anastasia Yendiki
发送时
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