[Freesurfer] about using -norandomness flag with recon-all

2022-11-15 Thread Xin Qi
External Email - Use Caution Hello Freesurfer Team: Because of ensuring that results are exactly the same from run to run, norandomness flag is used with recon-all. To better understand the randomness, we have a few questions listed below. 1. Which algorithms inside the

Re: [Freesurfer] about the error on running TRACULA using tutorial data

2022-06-17 Thread Xin Qi
On Tue, Jun 14, 2022 at 11:54 AM Xin Qi wrote: > Hi > > I downloaded the FreeSurfer tutorial data ( > https://secure-web.cisco.com/1aZGcrEMvj1M7CWaw2qMqI7Uc6viIEqIR5R9mSfLbdkK5NfQOsTeXLpTQzGmxSJ0BooezlCcStgDAizk87neVRwaZX8ebtmYtdaXrIyizheWiKA

[Freesurfer] about the errors running TRACULA using tutorial data

2022-06-16 Thread Xin Qi
External Email - Use Caution Hi FreeSurfer Support Team: I downloaded the FreeSurfer tutorial data (

[Freesurfer] about the error on running TRACULA using tutorial data

2022-06-14 Thread Xin Qi
External Email - Use Caution Hi I downloaded the FreeSurfer tutorial data (

Re: [Freesurfer] recon-all stuck at -fill on AWS batch processing

2021-11-08 Thread Xin Qi
JobTimeout duration? > > Thanks, > > -Paul > > On Sat, Nov 6, 2021 at 12:10 PM Xin Qi wrote: > >> External Email - Use Caution >> >> Hello FreeSurfer Developers, >> >> We are attempting to use recon-all -all on T1w MRI image analysis.

Re: [Freesurfer] about FreeSurfer QA tools errors

2021-08-12 Thread Xin Qi
; Those are specific to > FS 5.3 (we should update the wiki). v7.1 includes an executable named > `qatools.py` that functions similarly. > > > > best > > Andrew > > > > *From: *freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu&g

Re: [Freesurfer] Can't find longHippoSubfieldsT1.sh

2021-02-08 Thread Xin Qi
F%2Fwww.jeiglesias.com > > > > > From: on behalf of Xin Qi > > Reply-To: Freesurfer support list > Date: Sunday, February 7, 2021 at 10:07 > To: "freesurfer@nmr.mgh.harvard.edu" > Subject: [Freesurfer] Can't find longHippoSubfieldsT1.sh > &g

[Freesurfer] Can't find longHippoSubfieldsT1.sh

2021-02-07 Thread Xin Qi
External Email - Use Caution Dear Freesurfer Community, I ran the Freesurfer longitudinal pipeline for my subjects (1.5T, T1_data, 6 timepoints each). Now I want to continue with the longitudinal segmentation of hippocampal