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Dear Freesurfer users,
I would like to do the following:
- there is an ROI mask image file in the same space as the T1-weighted image
- I would like to use that mask to define the borders of a cortical area
- and then calculate volume and average
of Yakupov, Renat /DZNE
Date: Thursday, May 6, 2021 at 4:21 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology
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Hi Andrew,
thank you for your reply. I just uploaded the subject's directory under the
name
arvard.edu
on behalf of Yakupov, Renat /DZNE
Date: Friday, April 30, 2021 at 11:49 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology
External Email - Use Caution
Dear all,
I have a subject whose Freesurfer processing crashes durin
ssing, so you could replace it with a stub.
But why do you think it is fs_time?
On 3/19/2021 10:54 AM, Yakupov, Renat /DZNE wrote:
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Dear Freesurfer developers,
I am trying to run the longitudinal processing pipeline of our data on our HPC
cluster (SGE based) a
External Email - Use Caution
Dear Freesurfer developers,
I am trying to run the longitudinal processing pipeline of our data on our HPC
cluster (SGE based) and it crashes at the 3rd step - generating the
longitudinal runs. The exact command is 'recon-all -long tp1dir basedir
