Re: [Freesurfer] "Bump" - Fwd: lGI value is aberrantly high and misalignment fix

Sorry, I forgot to mention that I went back to the original line 51 of the Marie Schaer code in "make_outer_surface". No "fix" anymore. Marco 2016-03-16 11:51 GMT+02:00 Marco Bucci : > Dear all, > > I forward again my original post. > I also attach the recon-all.log of

Re: [Freesurfer] "Bump" - Fwd: lGI value is aberrantly high and misalignment fix

Hi Marco, It’s pretty strange because from the recon-all.log you sent, the first LGI process went fine (line 14584 and 19329 for the right and left hemispheres, on Dec 15). Then you don’t run anything else on the surfaces and just reprocess the exact same LGI process for the same subject (Dec