Re: [Freesurfer] "wm" boundaries and stats

2016-03-03 Thread Krieger, Donald N.
u > Subject: Re: [Freesurfer] "wm" boundaries and stats > > Hi Don, there is not an easy way to get this information. You can use > mri_binarize to create a surface of each ROI, something like > > mri_binarize --i wmparc.mgz --match 3013 --surf lh.wm.lingual

Re: [Freesurfer] "wm" boundaries and stats

2016-03-03 Thread Douglas N Greve
Hi Don, there is not an easy way to get this information. You can use mri_binarize to create a surface of each ROI, something like mri_binarize --i wmparc.mgz --match 3013 --surf lh.wm.lingual Use this version of mri_binarize

[Freesurfer] "wm" boundaries and stats

2016-03-01 Thread Krieger, Donald N.
Freesurfer provides 34 ctx label volumes on each side of the brain with adjacent wm labels. The boundary between each ctx volume and the co-named adjacent wm volume is a third "white" label. I would like to extract a few pieces of information from the analogous boundary between each wm volume