Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags? <https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65832.html> 2020-04-17<https://www.mail-archive.com/search?l

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

or whether one of the autorecons is sufficient? On 5/1/2020 10:21 AM, Billah, Tashrif wrote: [Freesurfer] Which autorecon uses -hippocampal-subfields flags? <https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65836.html> 2020-04-17

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

Are you asking whether you have to run recon-all all the way through in order to run the subfields or whether one of the autorecons is sufficient? On 5/1/2020 10:21 AM, Billah, Tashrif wrote: [Freesurfer] Which autorecon uses -hippocampal-subfields flags

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

[Freesurfer] Which autorecon uses -hippocampal-subfields flags?<https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65836.html> 2020-04-17<https://www.mail-archive.com/search?l=freesurfer%40nmr.mgh.harvard.edu=date:20200417=newest=1> Thread<https://www.mail-archi

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

sorry, what question? Please include previous emails On 4/21/2020 11:43 PM, Billah, Tashrif wrote: Hello Douglas, Waiting to hear back from you on my question Thanks, Tashrif ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

Hello Douglas, Waiting to hear back from you on my question Thanks, Tashrif ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Which autorecon uses -hippocampal-subfields flags?

Douglas, Let's try with an example. See the two ways T2 image can be integrated with recon-all Altogether: recon-all -subject subjectname -i /path/to/input_volume -T2 /path/to/T2_volume -T2pial -all autorecon3 only: recon-all -subject

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

ashrif . *From:* Billah, Tashrif *Sent:* Friday, April 17, 2020 1:52 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags? Douglas, A little more elaboration would help. What is "i

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

lds> integrates the subfileds with recon-all only but do no show combination with any autorecon commands. -Tashrif . From: Billah, Tashrif Sent: Friday, April 17, 2020 1:52 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Which autorecon uses -hippo

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

You have to run recon-all all the way through and then run the subfield scripts separately. On 4/17/2020 12:21 PM, Douglas N. Greve wrote: None! You have to run it all the way through to the end and then run them from the command line. On 4/17/2020 11:40 AM, Billah, Tashrif wrote: Hi all,

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

Douglas, A little more elaboration would help. What is "it" and what are "them"? -Tashrif . ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Which autorecon uses -hippocampal-subfields flags?

None! You have to run it all the way through to the end and then run them from the command line. On 4/17/2020 11:40 AM, Billah, Tashrif wrote: Hi all, Which of the three autorecons makes use of https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields flags? autorecon1, 2 , or 3? My

[Freesurfer] Which autorecon uses -hippocampal-subfields flags?

Hi all, Which of the three autorecons makes use of https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields flags? autorecon1, 2 , or 3? My goal is to use the flag specifically with one of the three and not with recon-all in general as shown in the above page. I do understand that the