Re: [Freesurfer] ANTs denoising

2023-11-15 Thread Douglas N. Greve
ANTs denoising is not used by default. Ants N4 is used to crfeate nu.mgz On 11/6/2023 11:46 AM, Alexopoulos, Dimitrios wrote: External Email - Use Caution To which anatomical volume is ANTs denoising applied to for generating the orig surface? We do ANTS denoising to the input T1

[Freesurfer] ANTs denoising

2023-11-06 Thread Alexopoulos, Dimitrios
External Email - Use Caution To which anatomical volume is ANTs denoising applied to for generating the orig surface? We do ANTS denoising to the input T1 before running recon-all and were wondering if we are denoising our data twice. Thx. Jim