Re: [Freesurfer] Affine Matrix Conversions

2011-11-07 Thread Bruce Fischl
Hi Matt tkregister2 can do this (using --noedit, which prevents the interface from opening up). cheers Bruce On Mon, 7 Nov 2011, Matt Glasser wrote: Hi,   I am wondering what tools FreeSurfer has to convert between different affine matrix formats.   For example, if I had a

Re: [Freesurfer] Affine Matrix Conversions

2011-11-07 Thread Douglas N Greve
Hi Matt, it is usually possible to do this with tkregister2, but not always so clear how to. Let me know if you need some directions on a specific case. doug Matt Glasser wrote: Hi, I am wondering what tools FreeSurfer has to convert between different affine matrix formats. For

Re: [Freesurfer] Affine Matrix Conversions

2011-11-07 Thread Matt Glasser
...@nmr.mgh.harvard.edu] Sent: Monday, November 07, 2011 9:28 AM To: m...@ma-tea.com Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Affine Matrix Conversions Hi Matt, it is usually possible to do this with tkregister2, but not always so clear how to. Let me know if you need some directions

[Freesurfer] Affine Matrix Conversions

2011-11-06 Thread Matt Glasser
Hi, I am wondering what tools FreeSurfer has to convert between different affine matrix formats. For example, if I had a talairach.xfm that did a better job than talairach.lta, is there a way to convert from one to the other? What about FSL FLIRT matricies? Can these be interconverted