Re: [Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-27 Thread Ottavio Morciano
External Email - Use Caution Thanks Sir 2018-06-26 9:33 GMT+02:00 Giuseppe Cabras : > Hi Ottavio, > > you can also install gnu parallel (https://www.gnu.org/software/parallel/) > and run in parallel on all your cpus with just one parallel command line: > > export

Re: [Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-26 Thread Giuseppe Cabras
Hi Ottavio, you can also install gnu parallel (https://www.gnu.org/software/parallel/) and run in parallel on all your cpus with just one parallel command line: export SUBJECTS_DIR=/home/my/study/fs60/MRIstudy/sMRI/native  cd /home/my/MRIdata/sMRI/native  ls *.nii | parallel --jobs 8

Re: [Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-25 Thread Ottavio Morciano
External Email - Use Caution Without taskset ? Just open terminal and type recon-all -i x -s y -all for each subjects? Il lun 25 giu 2018, 23:43 Douglas N. Greve ha scritto: > If you have 10 processors and enough memory, then you should run 10 > simultaneously (ie, without

Re: [Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-25 Thread Douglas N. Greve
If  you have 10 processors and enough memory, then you should run 10 simultaneously (ie, without using -openmp). On 06/25/2018 05:34 PM, Ottavio Morciano wrote: > > > Hi!I'am a student of medicine in Foggia,Italy.To elaborate a single > .nii file for a single subjects i use "recon-all -i (name

[Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-25 Thread Ottavio Morciano
External Email - Use Caution Hi!I'am a student of medicine in Foggia,Italy.To elaborate a single .nii file for a single subjects i use "recon-all -i (name of .nii file) -s (name of subjects) -all -openmp 8(i have 8 core)"and to finish the work is necessary 8 hours. Now i want