[Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed}

2016-01-26 Thread Alshikho, Mohamad J.
Dear Freesurfers, After segmenting the brain stem using FS6 tools. I used Free view to visualize the final images. In Free view I opened "orig.mgz", "wmparc.mgz" and "brainstemSsLabels.v10.mgz" Then I tried to check the segmented structures by flipping the images. I noticed an overlap between

Re: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed}

2016-01-26 Thread Eugenio Iglesias
t; <malshi...@mgh.harvard.edu> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Tuesday, January 26, 2016 4:05:24 PM Subject: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed} Dear Freesurfers, After segmenting the brain stem using FS6 tool

Re: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed}

2016-01-26 Thread Bruce Fischl
iso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > > > From: "Mohamad J. Alshikho" <malshi...@mgh.harvard.edu> > To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> > Sent: Tuesday, January 26, 2016 4:05:24 PM >

Re: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed}

2016-01-26 Thread Alshikho, Mohamad J.
From: "Mohamad J. Alshikho" <malshi...@mgh.harvard.edu> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Tuesday, January 26, 2016 4:05:24 PM Subject: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed} Dear Freesurfers,

Re: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed}

2016-01-26 Thread Eugenio Iglesias
t; <malshi...@mgh.harvard.edu> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Tuesday, January 26, 2016 4:25:35 PM Subject: Re: [Freesurfer] Brain stem segmentation in Freesurfer 6 {Disarmed} Bruce and Juan, Thanks a lot for your quick answer. I have