Re: [Freesurfer] CVS registration questions

2013-10-28 Thread Lilla Zollei
Hi Tommi, I am preparing to CVS register 30+ subjects to improve FSL probabilistic tractography alignment across subjects. First, thanks for a really cool tool! Then, I have some questions: 1. mri_cvs_register step1 is spherical registration. However, I have already run FS5.3 recon-all

Re: [Freesurfer] CVS registration questions

2013-10-28 Thread raij
Thanks Lilla! Which MNI152 version was used as template when doing nonlinear CVS-registering from cvs_avg35 into MNI152 space? For example, was this MNI152 ICBM 2009a 1mm Nonlinear Asymmetric? Bests, Tommi Hi Tommi, I am preparing to CVS register 30+ subjects to improve FSL probabilistic

[Freesurfer] CVS registration questions

2013-10-26 Thread raij
Hi Lilla et al, I am preparing to CVS register 30+ subjects to improve FSL probabilistic tractography alignment across subjects. First, thanks for a really cool tool! Then, I have some questions: 1. mri_cvs_register step1 is spherical registration. However, I have already run FS5.3 recon-all