When you say the MNI305 space, do you mean the 2mm space that is the
output of FSFAST? If so, then first run reg-mni305.2mm to create the
appropriate registration file. Then use this registration file when
running mri_vol2vol
doug
On 03/20/2014 02:39 PM, Omar Singleton wrote:
> Hello Freesurf
OK, so I can use the following command to go from MNI305 to subject space?
mri_vol2vol --mov AL15/mri.2mm/orig.mgz --targ lh.AItou_fs_2mm.nii.gz
--reg AL15/mri/transforms/talairach.xfm --invertmtx --inv --o
lh.aitou.ac15.2mm.nii.gz
I ran that command and got this error:
regio_read_register(): Su
mri_vol2vol should do the trick using the inverse (I think) of the
mri/transforms/talairach.xfm file. Doug can confirm
cheers
Bruce
On Thu, 20 Mar 2014, Omar Singleton wrote:
> Hello Freesurfers,
>
> I am interested in taking a volume file that is in fsaverage MNI305 space
> and converting this
Hello Freesurfers,
I am interested in taking a volume file that is in fsaverage MNI305 space
and converting this volume to each subject's volume. How can this be done?
Thanks!
Best,
Omar
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