you can use mri_morphometry and use the close operation to get rid of
some holes
On Sat, 25 Jul 2015, Liang Wang wrote:
Thanks Bruce. I applied mri_binarize to brainmask.mgz with specified threshold
and got many holes in the mask. In addition, brainmask.mgz includes the
cerebellum. I would
you could try binarizing the brainmask.mgz
cheers
Bruce
On Fri, 24 Jul
2015, Liang Wang wrote:
Hi folks,
I would like to create a brain outline based on the generated pial surface. This
outline will completely cover the whole cortex (ignoring gyrus and sulcus info)
and is treated as a brain
Thanks Bruce. I applied mri_binarize to brainmask.mgz with specified
threshold and got many holes in the mask. In addition, brainmask.mgz
includes the cerebellum. I would like to only create the brain (cerebral
cortex) outline based on the pial surface. Thanks.
Best,
Liang
--
Liang Wang, PhD
Hi folks,
I would like to create a brain outline based on the generated pial surface.
This outline will completely cover the whole cortex (ignoring gyrus and
sulcus info) and is treated as a brain outer surface on which some values
in the brain could be projected. I tried mris_expand, but it
